TargetGeneIntersect¶

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Documentation Status

Updates

A baby package that uses pybedtools intersect to gain target gene names for genomic data in a pandas dataframe. My first attempt at packaging, as well as a useful little tool for something I end up copying and pasting all the time.

Free software: MIT license
Documentation: https://targeneintersect.readthedocs.io.

Features¶

Input a BED formatted gene file and a BED formatted dataframe of genomic data
Receive a dataframe that now includes target gene names

Credits¶

This package is based on the BEDTools function intersect, as implemented in python by pybedtools. This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.